This patch update should finally fix the problem with EDD error message that the license is unauthorized. We realized that EDD handles activated sites differently if they have http/s URL prefixed or if they completely miss them. A fix that was introduced previously was working correctly, but missed the http/s URL part.
If you migrate a site from a staging or blueprint, you will have to first click on the update notice inside the builder, which will handle all the necessary magic behind it and redirect you to the WordPress update page. After that, all updates should work fine without the need to visit the builder first.
One of the advantages of checking the latest version of the plugin inside builder is that you will bypass WordPress transient, which might delay update by a few hours (depends on the site).
Please, let us know if you come across this error in the future updates.
Thanks